Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna preq1(34) s-adenosylmethionine ribosyltransferase-isomerase quea | DD563_04685 | Not Available | Negative | 986896 - 987951 | 37754.3 |
| hypothetical protein | DD563_04690 | Not Available | Negative | 987965 - 991453 | 122425.0 |
| peroxiredoxin | DD563_04695 | Not Available | Positive | 991579 - 992040 | 16864.1 |
| hypothetical protein | DD563_04700 | Not Available | Negative | 992037 - 992798 | 28586.7 |
| hypothetical protein | DD563_04705 | Not Available | Positive | 992797 - 993012 | 8474.27 |
| peptidase m23 | DD563_04710 | Not Available | Positive | 993161 - 994414 | 45745.0 |
| hypothetical protein | DD563_04715 | Not Available | Positive | 994404 - 994922 | 17930.3 |
| duf2256 domain-containing protein | DD563_04720 | Not Available | Negative | 995011 - 995157 | 5801.15 |
| deoxyribodipyrimidine photolyase | DD563_04725 | Not Available | Negative | 995170 - 996672 | 56484.8 |
| aminopeptidase n | DD563_04730 | Not Available | Positive | 997013 - 999562 | 94373.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
