Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| methylmalonate-semialdehyde dehydrogenase (coa acylating) | DD563_04635 | Not Available | Positive | 973777 - 975276 | 53570.2 |
| carboxylate-amine ligase | DD563_04640 | Not Available | Positive | 975343 - 976476 | 42055.1 |
| acyl-coa dehydrogenase | DD563_04645 | Not Available | Positive | 976552 - 977694 | 40989.0 |
| enoyl-coa hydratase | DD563_04650 | Not Available | Positive | 977691 - 978740 | 37418.6 |
| 3-hydroxyisobutyrate dehydrogenase | DD563_04655 | Not Available | Positive | 978744 - 979616 | 29207.3 |
| excinuclease abc subunit a | DD563_04660 | Not Available | Negative | 979635 - 982517 | 106216.0 |
| dihydrolipoamide dehydrogenase | DD563_04665 | Not Available | Negative | 982603 - 983160 | 21386.2 |
| dihydrolipoyl dehydrogenase | DD563_04670 | Not Available | Negative | 983304 - 984698 | 49427.3 |
| duf924 domain-containing protein | DD563_04675 | Not Available | Negative | 984845 - 985429 | 21987.2 |
| mfs transporter | DD563_04680 | Not Available | Negative | 985530 - 986792 | 45036.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
