Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna helicase ii | DD563_04585 | Not Available | Negative | 963191 - 965680 | 91695.2 |
| cell division protein zapa | DD563_04590 | Not Available | Negative | 965818 - 966213 | 14125.9 |
| hypothetical protein | DD563_04595 | Not Available | Negative | 966213 - 966707 | 17434.5 |
| transketolase | DD563_04600 | Not Available | Positive | 966921 - 968936 | 72163.2 |
| transcriptional regulator | DD563_04605 | Not Available | Negative | 968995 - 969606 | 22300.5 |
| type i glyceraldehyde-3-phosphate dehydrogenase | DD563_04610 | Not Available | Positive | 969743 - 970747 | 35491.6 |
| hypothetical protein | DD563_04615 | Not Available | Positive | 971119 - 971622 | 17665.4 |
| pantetheine-phosphate adenylyltransferase | DD563_04620 | Not Available | Negative | 971682 - 972173 | 17857.8 |
| histidine kinase | DD563_04625 | Not Available | Negative | 972265 - 972699 | 15491.0 |
| lysr family transcriptional regulator | DD563_04630 | Not Available | Negative | 972776 - 973672 | 33436.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
