Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DD563_04530 | Not Available | Positive | 954542 - 955045 | 17761.7 |
| ribonuclease d | DD563_04535 | Not Available | Negative | 955129 - 956286 | 42501.9 |
| phosphoribosylglycinamide formyltransferase | DD563_04540 | Not Available | Negative | 956407 - 957009 | 21466.9 |
| phosphoribosylformylglycinamidine cyclo-ligase | DD563_04545 | Not Available | Negative | 957011 - 958057 | 35602.8 |
| Trna-met | Not Available | Not Available | Positive | 958164 - 958240 | Not Available |
| hypothetical protein | DD563_04555 | Not Available | Negative | 958264 - 958668 | 14145.6 |
| cupin | DD563_04560 | Not Available | Negative | 958752 - 959114 | 12779.0 |
| glycine cleavage system protein t | DD563_04565 | Not Available | Positive | 959279 - 961699 | 88370.2 |
| tetr/acrr family transcriptional regulator | DD563_04575 | Not Available | Positive | 962154 - 962720 | 21444.7 |
| hypothetical protein | DD563_04580 | Not Available | Negative | 962746 - 963015 | 9707.76 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
