Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphoribosylformylglycinamidine synthase subunit purq | DD563_04480 | Not Available | Negative | 947232 - 947900 | 23204.7 |
| phosphoribosylformylglycinamidine synthase | DD563_04485 | Not Available | Negative | 947900 - 948130 | 8097.89 |
| phosphoribosylaminoimidazolesuccinocarboxamide synthase | DD563_04490 | Not Available | Negative | 948152 - 948913 | 28321.4 |
| duf1476 domain-containing protein | DD563_04495 | Not Available | Positive | 949076 - 949390 | 11662.7 |
| methionine synthase i | DD563_04500 | Not Available | Positive | 949857 - 950864 | 35620.3 |
| radical sam protein | DD563_04505 | Not Available | Negative | 950918 - 951982 | 39727.9 |
| cobalamin-binding protein | DD563_04510 | Not Available | Positive | 952247 - 952951 | 25585.1 |
| hypothetical protein | DD563_04515 | Not Available | Positive | 953055 - 953240 | 6425.2 |
| hypothetical protein | DD563_04520 | Not Available | Positive | 953237 - 953872 | 23332.9 |
| cysteine desulfuration protein sufe | DD563_04525 | Not Available | Negative | 953954 - 954361 | 14765.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
