Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| voc family protein | DD563_04430 | Not Available | Negative | 932225 - 932749 | 19565.2 |
| dehydrogenase | DD563_04435 | Not Available | Negative | 933172 - 935592 | 88377.3 |
| duf2254 domain-containing protein | DD563_04440 | Not Available | Negative | 935812 - 937023 | 44201.1 |
| cytochrome p450 | DD563_04445 | Not Available | Negative | 937204 - 938574 | 51582.4 |
| hypothetical protein | DD563_04450 | Not Available | Negative | 938571 - 939800 | 45022.7 |
| cytochrome c biogenesis protein | DD563_04455 | Not Available | Negative | 939854 - 940606 | 26530.7 |
| preprotein translocase subunit tatb | DD563_04460 | Not Available | Positive | 940699 - 940926 | 7942.69 |
| ribonuclease | DD563_04465 | Not Available | Negative | 941030 - 943654 | 96475.6 |
| dna-binding response regulator | DD563_04470 | Not Available | Negative | 944073 - 945407 | 49164.4 |
| two-component system sensor histidine kinase | DD563_04475 | Not Available | Negative | 945412 - 947172 | 64561.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
