Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf736 domain-containing protein | DD563_00315 | Not Available | Negative | 60214 - 60552 | 12634.8 |
| s26 family signal peptidase | DD563_00320 | Not Available | Negative | 60565 - 61143 | 20503.6 |
| glycosidase | DD563_00325 | Not Available | Negative | 61140 - 61661 | 19776.6 |
| replication protein | DD563_00330 | Not Available | Negative | 61651 - 62715 | 40089.7 |
| dna-binding protein | DD563_00335 | Not Available | Negative | 62737 - 63018 | 10155.0 |
| hypothetical protein | DD563_00340 | Not Available | Negative | 63204 - 63635 | 15953.2 |
| duf2285 domain-containing protein | DD563_00345 | Not Available | Negative | 64090 - 64353 | 10031.6 |
| hypothetical protein | DD563_00350 | Not Available | Negative | 64474 - 64728 | 9240.04 |
| duf736 domain-containing protein | DD563_00355 | Not Available | Negative | 64919 - 65242 | 11750.7 |
| hypothetical protein | DD563_00360 | Not Available | Negative | 65831 - 66271 | 15044.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
