Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp-dependent transcriptional regulator | DD563_04380 | Not Available | Positive | 920019 - 921386 | 50133.2 |
| vwa domain-containing protein | DD563_04385 | Not Available | Positive | 921567 - 922751 | 45317.5 |
| asp/glu racemase | DD563_04390 | Not Available | Negative | 922758 - 923498 | 25381.5 |
| anhydro-n-acetylmuramic acid kinase | DD563_04395 | Not Available | Negative | 923498 - 924622 | 39081.6 |
| tyrosine--trna ligase | DD563_04400 | Not Available | Positive | 924747 - 926000 | 46113.5 |
| 3-dehydroquinate synthase | DD563_04405 | Not Available | Negative | 926251 - 927363 | 39312.6 |
| shikimate kinase | DD563_04410 | Not Available | Negative | 927360 - 927878 | 18595.5 |
| hypothetical protein | DD563_04415 | Not Available | Positive | 928195 - 929700 | 52979.1 |
| recombinase xerd | DD563_04420 | Not Available | Positive | 929697 - 930641 | 34102.0 |
| hypothetical protein | DD563_04425 | Not Available | Positive | 930758 - 932065 | 47730.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
