Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| class ii fumarate hydratase | DD563_04330 | Not Available | Positive | 911121 - 912512 | 49341.3 |
| duf4169 domain-containing protein | DD563_04335 | Not Available | Positive | 912509 - 912685 | 6469.8 |
| aryl-sulfate sulfotransferase | DD563_04340 | Not Available | Positive | 912682 - 912930 | 8982.73 |
| gnat family n-acetyltransferase | DD563_04345 | Not Available | Positive | 912981 - 913427 | 15867.4 |
| ydiu family protein | DD563_04350 | Not Available | Positive | 913509 - 914921 | 51338.0 |
| dead/deah box helicase | DD563_04355 | Not Available | Negative | 914970 - 916283 | 45967.1 |
| transcriptional repressor | DD563_04360 | Not Available | Positive | 916668 - 917093 | 15846.9 |
| monooxygenase | DD563_04365 | Not Available | Negative | 917068 - 918201 | 40332.4 |
| rna polymerase-binding protein dksa | DD563_04370 | Not Available | Negative | 918271 - 918693 | 16473.4 |
| atp-binding protein | DD563_04375 | Not Available | Positive | 918889 - 919728 | 31754.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
