Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter permease | DD563_04280 | Not Available | Positive | 899911 - 900960 | 36303.1 |
| abc transporter permease | DD563_04285 | Not Available | Positive | 900962 - 901906 | 33386.7 |
| cytosine deaminase | DD563_04290 | Not Available | Positive | 901906 - 903180 | 46288.0 |
| l-serine ammonia-lyase | DD563_04295 | Not Available | Positive | 903296 - 904669 | 47662.3 |
| eama family transporter | DD563_04300 | Not Available | Positive | 904669 - 905601 | 33315.3 |
| thiamine diphosphokinase | DD563_04305 | Not Available | Negative | 905618 - 906286 | 23260.3 |
| hypothetical protein | DD563_04310 | Not Available | Positive | 906433 - 908763 | 82338.2 |
| Tmrna,resume consensus sequence (at 197): tacaattgcaaatgacaa | Not Available | Not Available | Positive | 908848 - 909180 | Not Available |
| chromate transporter | DD563_04320 | Not Available | Positive | 909305 - 910549 | 42902.9 |
| hypothetical protein | DD563_04325 | Not Available | Positive | 910610 - 911056 | 16944.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
