Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| carotenoid 1,2-hydratase | DD563_04230 | Not Available | Positive | 888807 - 889646 | 31204.2 |
| sensory protein tspo | DD563_04235 | Not Available | Negative | 889643 - 890122 | 17458.7 |
| phytoene synthase | DD563_04240 | Not Available | Negative | 890167 - 891210 | 37925.5 |
| phytoene desaturase | DD563_04245 | Not Available | Negative | 891207 - 892766 | 57107.2 |
| spheroidene monooxygenase | DD563_04250 | Not Available | Positive | 892933 - 893655 | 26349.7 |
| magnesium chelatase atpase subunit i | DD563_04255 | Not Available | Positive | 893652 - 894656 | 36332.7 |
| magnesium chelatase atpase subunit d | DD563_04260 | Not Available | Positive | 894656 - 896329 | 57674.1 |
| magnesium chelatase | DD563_04265 | Not Available | Positive | 896370 - 897200 | 29155.4 |
| bmp family abc transporter substrate-binding protein | DD563_04270 | Not Available | Positive | 897351 - 898376 | 37068.9 |
| sugar abc transporter atp-binding protein | DD563_04275 | Not Available | Positive | 898377 - 899921 | 54611.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
