Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| light-harvesting protein | DD563_04180 | Not Available | Negative | 879043 - 879210 | 6396.88 |
| light-harvesting protein | DD563_04185 | Not Available | Negative | 879225 - 879380 | 5796.02 |
| protein pufq | DD563_04190 | Not Available | Negative | 879502 - 879729 | 8357.13 |
| chlorophyllide a reductase subunit z | DD563_04195 | Not Available | Negative | 879726 - 881201 | 53678.7 |
| chlorophyllide a reductase subunit y | DD563_04200 | Not Available | Negative | 881329 - 882918 | 54875.0 |
| chlorophyllide a reductase iron protein subunit x | DD563_04205 | Not Available | Negative | 883045 - 884049 | 35690.6 |
| chlorophyll synthesis pathway protein bchc | DD563_04210 | Not Available | Negative | 884046 - 884987 | 32530.9 |
| sam-dependent methyltransferase | DD563_04215 | Not Available | Negative | 885112 - 886239 | 40171.6 |
| geranylgeranyl pyrophosphate synthase | DD563_04220 | Not Available | Negative | 886254 - 887132 | 30433.4 |
| methoxyneurosporene dehydrogenase | DD563_04225 | Not Available | Positive | 887257 - 888780 | 53321.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
