Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DD563_04130 | Not Available | Positive | 868402 - 869190 | 27103.2 |
| transcriptional regulator ppsr | DD563_04135 | Not Available | Positive | 869258 - 870682 | 51734.6 |
| chlorophyll synthase chlg | DD563_04140 | Not Available | Positive | 870773 - 871681 | 32269.0 |
| mfs transporter | DD563_04145 | Not Available | Positive | 871678 - 872961 | 44405.7 |
| geranylgeranyl diphosphate reductase | DD563_04150 | Not Available | Positive | 872965 - 874143 | 42566.5 |
| isopentenyl-diphosphate delta-isomerase | DD563_04155 | Not Available | Positive | 874140 - 874676 | 20216.1 |
| 1-deoxy-d-xylulose-5-phosphate synthase | DD563_04160 | Not Available | Negative | 874752 - 876668 | 66855.9 |
| hypothetical protein | DD563_04165 | Not Available | Negative | 876884 - 877123 | 8474.21 |
| photosynthetic reaction center subunit m | DD563_04170 | Not Available | Negative | 877135 - 878061 | 34481.5 |
| photosynthetic reaction center subunit l | DD563_04175 | Not Available | Negative | 878075 - 878905 | 31041.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
