Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| photosynthetic complex assembly protein | DD563_04080 | Not Available | Negative | 856171 - 856632 | 16464.8 |
| hypothetical protein | DD563_04085 | Not Available | Negative | 856644 - 857288 | 23475.7 |
| photosynthetic reaction center subunit h | DD563_04090 | Not Available | Negative | 857325 - 858098 | 28519.3 |
| mfs transporter | DD563_04095 | Not Available | Negative | 858117 - 859544 | 50372.0 |
| magnesium protoporphyrin ix methyltransferase | DD563_04100 | Not Available | Negative | 859541 - 860233 | 24891.1 |
| ferredoxin:protochlorophyllide reductase (atp-dependent) iron-sulfur atp-binding protein | DD563_04105 | Not Available | Negative | 860233 - 861129 | 32461.9 |
| magnesium chelatase subunit h | DD563_04110 | Not Available | Negative | 861150 - 864710 | 129231.0 |
| ferredoxin:protochlorophyllide reductase (atp-dependent) subunit b | DD563_04115 | Not Available | Negative | 864682 - 866235 | 57533.8 |
| ferredoxin:protochlorophyllide reductase (atp-dependent) subunit n | DD563_04120 | Not Available | Negative | 866333 - 867613 | 46329.8 |
| 2-vinyl bacteriochlorophyllide hydratase | DD563_04125 | Not Available | Negative | 867610 - 868116 | 18834.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
