Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| arac family transcriptional regulator | DD563_04030 | Not Available | Negative | 846013 - 847011 | 35959.5 |
| inositol monophosphatase | DD563_04035 | Not Available | Negative | 847015 - 847782 | 26889.9 |
| deor/glpr transcriptional regulator | DD563_04040 | Not Available | Negative | 847779 - 848552 | 27186.5 |
| choline kinase | DD563_04045 | Not Available | Positive | 848697 - 849590 | 32724.9 |
| fad-dependent oxidoreductase | DD563_04050 | Not Available | Positive | 849587 - 852025 | 88540.0 |
| cytochrome c | DD563_04055 | Not Available | Negative | 852114 - 852608 | 17368.3 |
| 5-aminolevulinate synthase | DD563_04060 | Not Available | Negative | 852691 - 853905 | 44272.2 |
| hypothetical protein | DD563_04065 | Not Available | Negative | 853902 - 854729 | 30001.2 |
| magnesium-protoporphyrin ix monomethyl ester (oxidative) cyclase | DD563_04070 | Not Available | Negative | 854729 - 855856 | 43179.4 |
| hypothetical protein | DD563_04075 | Not Available | Negative | 855853 - 856149 | 11283.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
