Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| monovalent cation/h+ antiporter subunit a | DD563_03980 | Not Available | Positive | 835542 - 838427 | 102685.0 |
| na+/h+ antiporter subunit c | DD563_03985 | Not Available | Positive | 838429 - 838776 | 12101.9 |
| monovalent cation/h+ antiporter subunit d | DD563_03990 | Not Available | Positive | 838773 - 840311 | 54467.3 |
| na+/h+ antiporter subunit e | DD563_03995 | Not Available | Positive | 840313 - 840813 | 18697.2 |
| k+/h+ antiporter subunit f | DD563_04000 | Not Available | Positive | 840810 - 841097 | 10123.0 |
| pesticidal protein cry5ba | DD563_04005 | Not Available | Positive | 841094 - 841489 | 13690.8 |
| hypothetical protein | DD563_04010 | Not Available | Negative | 841496 - 842554 | 38254.9 |
| agmatine deiminase family protein | DD563_04015 | Not Available | Negative | 842551 - 843531 | 35081.3 |
| n-carbamoylputrescine amidase | DD563_04020 | Not Available | Negative | 843613 - 844491 | 32219.0 |
| ectoine hydrolase doea | DD563_04025 | Not Available | Positive | 844624 - 845808 | 43426.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
