Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cusa/czca family heavy metal efflux rnd transporter | DD563_00265 | Not Available | Positive | 47910 - 51089 | 116062.0 |
| cation transporter | DD563_00270 | Not Available | Positive | 51125 - 51469 | 12081.9 |
| copper resistance protein | DD563_00275 | Not Available | Positive | 51539 - 51898 | 12626.8 |
| copper-binding protein | DD563_00280 | Not Available | Positive | 51905 - 52855 | 33348.8 |
| copper oxidase | DD563_00285 | Not Available | Positive | 52852 - 54243 | 50308.2 |
| metal-binding protein | DD563_00290 | Not Available | Positive | 54284 - 54733 | 15733.8 |
| copg family transcriptional regulator | DD563_00295 | Not Available | Negative | 55006 - 55437 | 15921.0 |
| conjugal transfer protein trag | DD563_00300 | Not Available | Negative | 55448 - 57436 | 73675.2 |
| type vi secretion protein | DD563_00305 | Not Available | Negative | 57467 - 59206 | 63951.5 |
| lytic transglycosylase | DD563_00310 | Not Available | Negative | 59466 - 60209 | 26958.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
