Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| heme a synthase | DD563_03870 | Not Available | Negative | 819021 - 820187 | 43101.2 |
| rna methyltransferase | DD563_03875 | Not Available | Negative | 820264 - 821010 | 27522.9 |
| thiamine phosphate synthase | DD563_03880 | Not Available | Positive | 821135 - 821755 | 21795.7 |
| 1-acyl-sn-glycerol-3-phosphate acyltransferase | DD563_03885 | Not Available | Negative | 821752 - 822588 | 30506.8 |
| ornithine-acyl-acp acyltransferase | DD563_03890 | Not Available | Negative | 822585 - 823358 | 28500.4 |
| duf3553 domain-containing protein | DD563_03895 | Not Available | Negative | 823470 - 823652 | 6465.79 |
| histidine phosphotransferase | DD563_03900 | Not Available | Positive | 823668 - 824282 | 21607.1 |
| glutamate-5-semialdehyde dehydrogenase | DD563_03905 | Not Available | Negative | 824279 - 825544 | 43652.6 |
| glutamate 5-kinase | DD563_03910 | Not Available | Negative | 825586 - 826692 | 38416.5 |
| gtpase obge | DD563_03915 | Not Available | Negative | 826680 - 827714 | 36758.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
