Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fe-s cluster assembly protein sufb | DD563_03815 | Not Available | Negative | 804294 - 805817 | 56438.6 |
| rrf2 family transcriptional regulator | DD563_03825 | Not Available | Negative | 806963 - 807424 | 16374.7 |
| alpha/beta hydrolase | DD563_03830 | Not Available | Positive | 807607 - 808260 | 24162.8 |
| hypothetical protein | DD563_03835 | Not Available | Positive | 808264 - 808500 | 8477.13 |
| transcription-repair coupling factor | DD563_03840 | Not Available | Negative | 808632 - 812096 | 126527.0 |
| component of sufbcd complex | DD563_03845 | Not Available | Negative | 812106 - 812633 | 19813.8 |
| porphobilinogen synthase | DD563_03850 | Not Available | Positive | 812750 - 813757 | 36268.2 |
| twin-arginine translocation pathway signal | DD563_03855 | Not Available | Positive | 813881 - 814444 | 19324.1 |
| dna gyrase subunit a | DD563_03860 | Not Available | Positive | 814779 - 817508 | 100283.0 |
| carboxypeptidase m32 | DD563_03865 | Not Available | Negative | 817552 - 819024 | 54063.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
