Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 5-aminolevulinate synthase | DD563_03765 | Not Available | Negative | 794621 - 795856 | 44810.7 |
| hypothetical protein | DD563_03770 | Not Available | Positive | 796092 - 797474 | 49562.1 |
| Trna-arg | Not Available | Not Available | Positive | 798310 - 798386 | Not Available |
| cysteine desulfurase | DD563_03780 | Not Available | Negative | 798441 - 799661 | 44114.9 |
| yip1 family protein | DD563_03785 | Not Available | Negative | 799663 - 800325 | 22840.3 |
| yip1 family protein | DD563_03790 | Not Available | Negative | 800259 - 800744 | 17350.8 |
| fe-s cluster assembly protein sufd | DD563_03795 | Not Available | Negative | 800744 - 802030 | 46532.7 |
| fe-s cluster assembly atpase sufc | DD563_03800 | Not Available | Negative | 802030 - 802785 | 27332.1 |
| hypothetical protein | DD563_03805 | Not Available | Negative | 802822 - 803424 | 22571.1 |
| fkbm family methyltransferase | DD563_03810 | Not Available | Negative | 803469 - 804230 | 27819.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
