Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DD563_03715 | Not Available | Negative | 781185 - 781970 | 28652.1 |
| amidase | DD563_03720 | Not Available | Negative | 782028 - 783410 | 47798.9 |
| peptide chain release factor 2 | DD563_03725 | Not Available | Negative | 783509 - 784633 | 41355.0 |
| penicillin-binding protein | DD563_03730 | Not Available | Negative | 784747 - 787263 | 92876.8 |
| n-acetylmuramoyl-l-alanine amidase | DD563_03735 | Not Available | Negative | 787364 - 788584 | 43688.2 |
| 1-aminocyclopropane-1-carboxylate deaminase | DD563_03740 | Not Available | Negative | 788685 - 789827 | 40775.6 |
| peptidase m48 | DD563_03745 | Not Available | Positive | 789884 - 791203 | 47414.9 |
| disulfide bond formation protein dsba | DD563_03750 | Not Available | Positive | 791236 - 791988 | 26426.6 |
| 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase | DD563_03755 | Not Available | Negative | 792016 - 793161 | 40714.9 |
| duf4115 domain-containing protein | DD563_03760 | Not Available | Negative | 793232 - 794512 | 44653.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
