Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 6-phosphogluconolactonase | DD563_03615 | Not Available | Negative | 761790 - 762464 | 23921.2 |
| glucose-6-phosphate dehydrogenase | DD563_03620 | Not Available | Negative | 762461 - 763915 | 54077.5 |
| radical sam protein | DD563_03625 | Not Available | Positive | 764070 - 765023 | 34505.0 |
| xaa-pro dipeptidase | DD563_03630 | Not Available | Positive | 765100 - 766248 | 41481.7 |
| peptidase m48 | DD563_03635 | Not Available | Positive | 766307 - 766987 | 25105.6 |
| pin domain-containing protein | DD563_03640 | Not Available | Negative | 767039 - 767578 | 19185.4 |
| rlmi/rlmk family 23s rrna methyltransferase | DD563_03645 | Not Available | Negative | 767575 - 768792 | 42533.3 |
| hypothetical protein | DD563_03650 | Not Available | Negative | 768830 - 769459 | 22365.2 |
| hypothetical protein | DD563_03655 | Not Available | Negative | 769614 - 769895 | 10504.5 |
| bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase | DD563_03660 | Not Available | Negative | 769908 - 772739 | 101428.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
