Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| arginine--trna ligase | DD563_03565 | Not Available | Negative | 750821 - 752566 | 62965.9 |
| deoxyguanosinetriphosphate triphosphohydrolase | DD563_03570 | Not Available | Negative | 752619 - 753815 | 43644.9 |
| iron-sulfur cluster assembly accessory protein | DD563_03575 | Not Available | Positive | 753895 - 754218 | 11295.3 |
| hypothetical protein | DD563_03580 | Not Available | Negative | 754238 - 755155 | 32168.7 |
| hypothetical protein | DD563_03585 | Not Available | Negative | 755152 - 756246 | 40922.6 |
| hypothetical protein | DD563_03590 | Not Available | Negative | 756296 - 756745 | 14483.4 |
| exodeoxyribonuclease iii | DD563_03595 | Not Available | Positive | 757134 - 757913 | 29080.4 |
| eama family transporter | DD563_03600 | Not Available | Positive | 757910 - 758797 | 30759.1 |
| phosphopyruvate hydratase | DD563_03605 | Not Available | Positive | 758872 - 760149 | 45312.9 |
| glucose-6-phosphate isomerase | DD563_03610 | Not Available | Negative | 760183 - 761784 | 57440.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
