Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter permease | DD563_03465 | Not Available | Negative | 734035 - 735039 | 35486.0 |
| sugar abc transporter atp-binding protein | DD563_03470 | Not Available | Negative | 735036 - 736640 | 57862.7 |
| tmao reductase system periplasmic protein tort | DD563_03475 | Not Available | Negative | 736647 - 737726 | 37968.0 |
| Trna-gly | Not Available | Not Available | Positive | 738112 - 738185 | Not Available |
| elongation factor 3 | DD563_03485 | Not Available | Negative | 738238 - 740052 | 66101.0 |
| ornithine-acyl-acp acyltransferase | DD563_03490 | Not Available | Negative | 740084 - 740869 | 28281.0 |
| outer membrane protein assembly factor bame | DD563_03495 | Not Available | Negative | 740957 - 741409 | 16320.3 |
| hypothetical protein | DD563_03500 | Not Available | Positive | 741523 - 742077 | 20088.9 |
| 50s ribosomal protein l32 | DD563_03505 | Not Available | Positive | 742233 - 742439 | 7535.65 |
| phosphate acyltransferase plsx | DD563_03510 | Not Available | Positive | 742476 - 743576 | 38868.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
