Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DD563_03415 | Not Available | Negative | 721487 - 722605 | 42025.3 |
| hypothetical protein | DD563_03420 | Not Available | Negative | 722608 - 724158 | 56987.4 |
| two-component sensor histidine kinase | DD563_03425 | Not Available | Negative | 724318 - 725604 | 47650.2 |
| mbl fold metallo-hydrolase | DD563_03430 | Not Available | Positive | 725691 - 726617 | 32823.1 |
| Trna-asn | Not Available | Not Available | Positive | 726667 - 726741 | Not Available |
| methylhydantoinase | DD563_03440 | Not Available | Negative | 727529 - 729490 | 72190.3 |
| hydantoinase | DD563_03445 | Not Available | Negative | 729494 - 731521 | 72454.4 |
| arac family transcriptional regulator | DD563_03450 | Not Available | Negative | 731622 - 732584 | 36235.0 |
| cupin | DD563_03455 | Not Available | Negative | 732726 - 733049 | 11918.9 |
| abc transporter permease | DD563_03460 | Not Available | Negative | 733059 - 734042 | 33301.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
