Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DD563_00215 | Not Available | Negative | 38160 - 38519 | 13256.5 |
| metal resistance protein | DD563_00220 | Not Available | Positive | 38583 - 38861 | 10090.2 |
| mfs transporter | DD563_00225 | Not Available | Positive | 38871 - 40190 | 47306.4 |
| hypothetical protein | DD563_00230 | Not Available | Negative | 40255 - 40851 | 21408.5 |
| hypothetical protein | DD563_00235 | Not Available | Positive | 40870 - 41487 | 22614.6 |
| cytochrome c | DD563_00240 | Not Available | Negative | 41528 - 41992 | 16721.5 |
| copper-transporting atpase | DD563_00245 | Not Available | Negative | 41989 - 44436 | 85383.6 |
| duf305 domain-containing protein | DD563_00250 | Not Available | Negative | 44496 - 44972 | 17812.1 |
| hypothetical protein | DD563_00255 | Not Available | Positive | 45253 - 45612 | 12705.4 |
| efflux rnd transporter periplasmic adaptor subunit | DD563_00260 | Not Available | Positive | 45703 - 47913 | 78030.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
