Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fe3+/spermidine/putrescine abc transporter atp-binding protein | DD563_03315 | Not Available | Negative | 688740 - 689816 | 39464.6 |
| sodium:proline symporter | DD563_03320 | Not Available | Negative | 689931 - 691298 | 48003.5 |
| short-chain dehydrogenase | DD563_03325 | Not Available | Negative | 691411 - 692190 | 26079.5 |
| hypothetical protein | DD563_03330 | Not Available | Positive | 692338 - 693357 | 36725.0 |
| peptide chain release factor 3 | DD563_03335 | Not Available | Positive | 693442 - 695052 | 59655.6 |
| sugar transferase | DD563_03340 | Not Available | Positive | 695903 - 696577 | 25887.6 |
| exopolysaccharide biosynthesis protein | DD563_03345 | Not Available | Positive | 696708 - 697586 | 31953.3 |
| duf874 domain-containing protein | DD563_03350 | Not Available | Positive | 697751 - 699031 | 46994.9 |
| polysaccharide biosynthesis protein | DD563_03355 | Not Available | Negative | 699035 - 700393 | 48793.3 |
| colanic acid biosynthesis glycosyltransferase wcal | DD563_03360 | Not Available | Positive | 700608 - 701807 | 43052.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
