Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| amidophosphoribosyltransferase | DD563_03265 | Not Available | Positive | 680423 - 681901 | 54044.8 |
| hypothetical protein | DD563_03270 | Not Available | Positive | 682004 - 682345 | 11722.8 |
| oxidoreductase | DD563_03275 | Not Available | Positive | 682416 - 683069 | 23192.7 |
| 5'/3'-nucleotidase sure | DD563_03280 | Not Available | Positive | 683166 - 683945 | 27528.9 |
| protein-l-isoaspartate o-methyltransferase | DD563_03285 | Not Available | Positive | 683942 - 684604 | 24167.3 |
| peptidase m23 | DD563_03290 | Not Available | Positive | 684644 - 685825 | 40778.9 |
| aaa family atpase | DD563_03295 | Not Available | Negative | 686028 - 686867 | 30732.6 |
| twin-arginine translocase subunit tatc | DD563_03300 | Not Available | Negative | 686864 - 687733 | 31938.1 |
| twin-arginine translocase subunit tatb | DD563_03305 | Not Available | Negative | 687730 - 688341 | 20856.2 |
| sec-independent protein translocase tata | DD563_03310 | Not Available | Negative | 688349 - 688573 | 7827.53 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
