Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| orotate phosphoribosyltransferase | DD563_03215 | Not Available | Positive | 671780 - 672460 | 25056.1 |
| replicative dna helicase | DD563_03220 | Not Available | Positive | 672704 - 674218 | 55612.8 |
| alanine racemase | DD563_03225 | Not Available | Positive | 674292 - 675329 | 36268.4 |
| abc transporter permease | DD563_03230 | Not Available | Positive | 675326 - 676111 | 27228.1 |
| abc transporter atp-binding protein | DD563_03235 | Not Available | Positive | 676229 - 676975 | 26631.4 |
| hypothetical protein | DD563_03240 | Not Available | Positive | 676977 - 677333 | 12159.6 |
| paraquat-inducible membrane protein a | DD563_03245 | Not Available | Positive | 677366 - 677815 | 15956.5 |
| dna repair protein rada | DD563_03250 | Not Available | Positive | 677848 - 679218 | 47104.7 |
| colicin v production cvpa | DD563_03255 | Not Available | Positive | 679276 - 679836 | 19569.0 |
| eama-like transporter family protein | DD563_03260 | Not Available | Positive | 679799 - 680287 | 16214.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
