Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| translation initiation factor if-3 | DD563_03165 | Not Available | Positive | 660460 - 661146 | 25897.4 |
| carbon monoxide dehydrogenase | DD563_03170 | Not Available | Negative | 661219 - 662001 | 26722.9 |
| carbon monoxide dehydrogenase | DD563_03175 | Not Available | Negative | 662146 - 664509 | 84868.2 |
| carbon monoxide dehydrogenase | DD563_03180 | Not Available | Negative | 664591 - 665076 | 16893.1 |
| molybdopterin biosynthesis protein | DD563_03185 | Not Available | Negative | 665199 - 666194 | 33002.5 |
| xdhc/coxi family protein | DD563_03190 | Not Available | Negative | 666191 - 667153 | 33174.0 |
| vwa domain-containing protein | DD563_03195 | Not Available | Negative | 667150 - 668457 | 48198.7 |
| atpase | DD563_03200 | Not Available | Negative | 668525 - 669427 | 33020.8 |
| phosphoadenosine phosphosulfate reductase | DD563_03205 | Not Available | Positive | 669608 - 670582 | 36206.3 |
| dihydroorotase | DD563_03210 | Not Available | Positive | 670646 - 671704 | 38364.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
