Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| suf system fe-s cluster assembly protein | DD563_03110 | Not Available | Positive | 652335 - 652697 | 13106.7 |
| iron-sulfur cluster assembly accessory protein | DD563_03115 | Not Available | Positive | 652800 - 653150 | 12534.2 |
| triose-phosphate isomerase | DD563_03120 | Not Available | Positive | 653250 - 653996 | 25509.4 |
| arsr family transcriptional regulator | DD563_03125 | Not Available | Negative | 653993 - 654463 | 17738.4 |
| hypothetical protein | DD563_03130 | Not Available | Positive | 654607 - 655590 | 34751.1 |
| duf2849 domain-containing protein | DD563_03135 | Not Available | Positive | 655590 - 655892 | 11096.9 |
| sulfite reductase | DD563_03140 | Not Available | Positive | 655892 - 657559 | 61469.2 |
| phosphoadenylyl-sulfate reductase | DD563_03145 | Not Available | Positive | 657546 - 658322 | 28350.9 |
| oxidoreductase | DD563_03150 | Not Available | Positive | 658319 - 658723 | 14995.6 |
| ferredoxin--nadp(+) reductase | DD563_03155 | Not Available | Positive | 658796 - 659644 | 31624.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
