Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DD563_03060 | Not Available | Negative | 640162 - 641235 | 38074.9 |
| 1-deoxy-d-xylulose-5-phosphate synthase | DD563_03065 | Not Available | Negative | 641350 - 643278 | 67679.3 |
| farnesyl-diphosphate synthase | DD563_03070 | Not Available | Negative | 643309 - 644079 | 26836.0 |
| exodeoxyribonuclease vii small subunit | DD563_03075 | Not Available | Negative | 644167 - 644421 | 8829.46 |
| hypothetical protein | DD563_03080 | Not Available | Positive | 644534 - 645505 | 35986.8 |
| endopeptidase la | DD563_03085 | Not Available | Negative | 645587 - 647998 | 88711.5 |
| trna guanosine(34) transglycosylase tgt | DD563_03090 | Not Available | Negative | 648268 - 649398 | 41267.6 |
| paraslipin | DD563_03095 | Not Available | Positive | 649534 - 650424 | 32237.9 |
| hypothetical protein | DD563_03100 | Not Available | Positive | 650421 - 650693 | 9686.36 |
| 30s ribosomal protein s6--l-glutamate ligase | DD563_03105 | Not Available | Positive | 650830 - 652230 | 50702.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
