Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acetylornithine deacetylase | DD563_02960 | Not Available | Positive | 618826 - 620115 | 47205.0 |
| aminoglycoside phosphotransferase | DD563_02965 | Not Available | Positive | 620181 - 621245 | 38107.7 |
| aspartate aminotransferase family protein | DD563_02970 | Not Available | Positive | 621252 - 622586 | 47648.1 |
| eama family transporter | DD563_02975 | Not Available | Positive | 622620 - 623510 | 31874.4 |
| is30 family transposase | DD563_02980 | Not Available | Positive | 623627 - 624637 | 39892.8 |
| acyl-coa dehydrogenase | DD563_02985 | Not Available | Negative | 624756 - 625982 | 44519.6 |
| lysr family transcriptional regulator | DD563_02990 | Not Available | Positive | 626091 - 626999 | 32272.7 |
| phosphate regulon transcriptional regulatory protein phob | DD563_02995 | Not Available | Negative | 626996 - 627685 | 25809.0 |
| phosphate transport system regulatory protein phou | DD563_03000 | Not Available | Negative | 627699 - 628409 | 26770.4 |
| phosphate abc transporter atp-binding protein | DD563_03005 | Not Available | Negative | 628415 - 629215 | 29619.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
