Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptide abc transporter atp-binding protein | DD563_02910 | Not Available | Positive | 607140 - 608138 | 36273.7 |
| zn-dependent hydrolase | DD563_02915 | Not Available | Negative | 608202 - 609440 | 44912.1 |
| oxidoreductase | DD563_02920 | Not Available | Negative | 609433 - 610179 | 26428.4 |
| microcin abc transporter atp-binding protein | DD563_02925 | Not Available | Negative | 610207 - 611829 | 58172.8 |
| abc transporter permease | DD563_02930 | Not Available | Negative | 611826 - 612665 | 30311.1 |
| abc transporter permease | DD563_02935 | Not Available | Negative | 612662 - 613633 | 35454.3 |
| peptide abc transporter substrate-binding protein | DD563_02940 | Not Available | Negative | 613713 - 615284 | 58283.4 |
| gntr family transcriptional regulator | DD563_02945 | Not Available | Negative | 615351 - 616043 | 25955.5 |
| histone deacetylase family protein | DD563_02950 | Not Available | Positive | 616202 - 617230 | 36800.3 |
| acetolactate synthase large subunit | DD563_02955 | Not Available | Positive | 617227 - 618801 | 53904.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
