Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| conjugal transfer protein trbe | DD563_00165 | Not Available | Negative | 29775 - 32297 | 91302.9 |
| conjugal transfer protein | DD563_00170 | Not Available | Negative | 32301 - 32570 | 9574.16 |
| conjugal transfer protein trbc | DD563_00175 | Not Available | Negative | 32570 - 32902 | 11378.2 |
| p-type conjugative transfer atpase trbb | DD563_00180 | Not Available | Negative | 32902 - 33882 | 34739.9 |
| isoprenylcysteine carboxylmethyltransferase family protein | DD563_00185 | Not Available | Negative | 34173 - 34724 | 20517.7 |
| cation transporter | DD563_00190 | Not Available | Negative | 34721 - 35356 | 22691.8 |
| transglutaminase | DD563_00195 | Not Available | Negative | 35356 - 36126 | 28763.4 |
| merr family transcriptional regulator | DD563_00200 | Not Available | Positive | 36197 - 36613 | 15633.8 |
| transmembrane anchor protein | DD563_00205 | Not Available | Negative | 36738 - 37352 | 22050.6 |
| hypothetical protein | DD563_00210 | Not Available | Negative | 37368 - 38105 | 26939.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
