Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| integrase | DD563_02860 | Not Available | Positive | 593680 - 594777 | 40323.1 |
| chromosome partitioning protein parb | DD563_02865 | Not Available | Negative | 595411 - 596409 | 37415.4 |
| chromosome partitioning protein | DD563_02870 | Not Available | Negative | 596406 - 597608 | 44109.1 |
| replication protein repb | DD563_02875 | Not Available | Positive | 598238 - 599287 | 39680.5 |
| hypothetical protein | DD563_02880 | Not Available | Negative | 599312 - 600064 | 27930.1 |
| phosphonate monoester hydrolase | DD563_02885 | Not Available | Positive | 600179 - 601657 | 53652.9 |
| peptide abc transporter substrate-binding protein | DD563_02890 | Not Available | Positive | 601850 - 603889 | 74525.2 |
| abc transporter permease | DD563_02895 | Not Available | Positive | 603985 - 604989 | 36889.7 |
| abc transporter permease | DD563_02900 | Not Available | Positive | 604994 - 606148 | 43029.5 |
| dipeptide/oligopeptide/nickel abc transporter atp-binding protein | DD563_02905 | Not Available | Positive | 606154 - 607143 | 35696.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
