Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transcriptional regulator | DD563_02810 | Not Available | Positive | 584815 - 585150 | 11725.2 |
| hypothetical protein | DD563_02815 | Not Available | Positive | 585155 - 585715 | 21281.3 |
| metallohydrolase | DD563_02820 | Not Available | Positive | 585960 - 587132 | 42622.4 |
| thiamine biosynthesis protein thif | DD563_02825 | Not Available | Positive | 587142 - 589460 | 84270.5 |
| hypothetical protein | DD563_02830 | Not Available | Positive | 589463 - 590200 | 27064.4 |
| duf1778 domain-containing protein | DD563_02835 | Not Available | Positive | 590334 - 590648 | 11280.2 |
| gnat family n-acetyltransferase | DD563_02840 | Not Available | Positive | 590638 - 591186 | 19935.1 |
| hypothetical protein | DD563_02845 | Not Available | Negative | 591226 - 591951 | 28024.6 |
| chromosome segregation protein scpb | DD563_02850 | Not Available | Negative | 591951 - 592580 | 23160.6 |
| hypothetical protein | DD563_02855 | Not Available | Negative | 592592 - 593554 | 34284.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
