Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| elongation factor ts | DD563_02710 | Not Available | Positive | 561027 - 561899 | 30108.2 |
| type ii 3-dehydroquinate dehydratase | DD563_02715 | Not Available | Negative | 562280 - 562723 | 15538.8 |
| gntr family transcriptional regulator | DD563_02720 | Not Available | Negative | 562796 - 563452 | 23960.8 |
| abc transporter substrate-binding protein | DD563_02725 | Not Available | Positive | 563591 - 564577 | 35384.0 |
| c4-dicarboxylate abc transporter substrate-binding protein | DD563_02730 | Not Available | Positive | 564646 - 565194 | 20122.2 |
| c4-dicarboxylate abc transporter | DD563_02735 | Not Available | Positive | 565196 - 566512 | 46555.4 |
| decarboxylase | DD563_02740 | Not Available | Positive | 566509 - 567747 | 44751.7 |
| malonyl-coa synthase | DD563_02745 | Not Available | Positive | 567753 - 569282 | 54710.5 |
| is30 family transposase | DD563_02750 | Not Available | Positive | 569418 - 570428 | 39892.8 |
| nadh:flavin oxidoreductase | DD563_02755 | Not Available | Negative | 570706 - 572775 | 76098.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
