Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nadp-dependent isocitrate dehydrogenase | DD563_02660 | Not Available | Negative | 550353 - 551567 | 45060.8 |
| polyketide biosynthesis protein | DD563_02665 | Not Available | Negative | 551689 - 552327 | 23381.9 |
| benzoate--coa ligase | DD563_02670 | Not Available | Negative | 552314 - 553816 | 53439.1 |
| transcriptional regulator | DD563_02675 | Not Available | Positive | 553951 - 554607 | 24252.7 |
| entericidin ecna/b family protein | DD563_02680 | Not Available | Negative | 554791 - 554904 | 3841.9 |
| abc transporter substrate-binding protein | DD563_02685 | Not Available | Negative | 554952 - 556793 | 67800.7 |
| 3-hydroxybutyrate dehydrogenase | DD563_02690 | Not Available | Positive | 557161 - 557946 | 27168.5 |
| patatin | DD563_02695 | Not Available | Positive | 558013 - 559032 | 36606.9 |
| hypothetical protein | DD563_02700 | Not Available | Negative | 559127 - 559822 | 25282.2 |
| 30s ribosomal protein s2 | DD563_02705 | Not Available | Positive | 560120 - 560941 | 29074.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
