Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pas domain-containing sensor histidine kinase | DD563_02610 | Not Available | Positive | 535702 - 536793 | 38613.6 |
| nitrogen regulation protein nr(i) | DD563_02615 | Not Available | Positive | 536796 - 538154 | 49415.8 |
| pas domain-containing sensor histidine kinase | DD563_02620 | Not Available | Positive | 538207 - 540567 | 86950.8 |
| sigma-54-dependent fis family transcriptional regulator | DD563_02625 | Not Available | Positive | 540575 - 541981 | 51390.6 |
| trk system potassium transporter trka | DD563_02630 | Not Available | Positive | 542088 - 543464 | 49404.4 |
| potassium transporter trkh | DD563_02635 | Not Available | Positive | 543490 - 544989 | 52887.4 |
| rna chaperone hfq | DD563_02640 | Not Available | Positive | 545119 - 545358 | 8952.79 |
| gtpase hflx | DD563_02645 | Not Available | Positive | 545358 - 546635 | 47064.7 |
| sodium:calcium antiporter | DD563_02650 | Not Available | Positive | 546728 - 547639 | 30536.8 |
| penicillin acylase family protein | DD563_02655 | Not Available | Negative | 547644 - 550115 | 89946.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
