Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| histidine phosphatase family protein | DD563_02560 | Not Available | Positive | 530063 - 530641 | 20353.4 |
| Trna-val | Not Available | Not Available | Positive | 530694 - 530769 | Not Available |
| duf393 domain-containing protein | DD563_02570 | Not Available | Negative | 531020 - 531403 | 14854.8 |
| Trna-asp | Not Available | Not Available | Positive | 531581 - 531657 | Not Available |
| hypothetical protein | DD563_02580 | Not Available | Negative | 531715 - 531897 | 6946.61 |
| ubiquinone-binding protein | DD563_02585 | Not Available | Positive | 532026 - 532475 | 17407.7 |
| damage-inducible protein cina | DD563_02590 | Not Available | Negative | 532463 - 532936 | 16005.2 |
| phosphatidylglycerophosphatase a | DD563_02595 | Not Available | Negative | 532933 - 533430 | 17358.8 |
| bifunctional 2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase/2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthase | DD563_02600 | Not Available | Negative | 533427 - 534557 | 38960.7 |
| trna dihydrouridine synthase dusb | DD563_02605 | Not Available | Positive | 534719 - 535705 | 34527.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
