Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tat pathway signal protein | DD563_02510 | Not Available | Negative | 520991 - 521557 | 20715.9 |
| murein l,d-transpeptidase | DD563_02515 | Not Available | Positive | 521898 - 523523 | 60722.0 |
| udp-3-o-(3-hydroxymyristoyl)glucosamine n-acyltransferase | DD563_02520 | Not Available | Positive | 523552 - 524643 | 37444.3 |
| phosphopantetheine-binding protein | DD563_02525 | Not Available | Positive | 524674 - 524931 | 9372.98 |
| beta-acp synthase | DD563_02530 | Not Available | Positive | 524928 - 526139 | 42411.8 |
| invasion-associated locus b family protein | DD563_02535 | Not Available | Negative | 526243 - 526869 | 21383.1 |
| atp-binding protein | DD563_02540 | Not Available | Positive | 527364 - 528923 | 55923.1 |
| hypothetical protein | DD563_02545 | Not Available | Negative | 529032 - 529220 | 5963.39 |
| dna-binding protein | DD563_02550 | Not Available | Positive | 529611 - 529934 | 11602.1 |
| Trna-val | Not Available | Not Available | Positive | 529953 - 530027 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
