Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sodium:proton antiporter | DD563_02460 | Not Available | Positive | 507573 - 508682 | 37651.0 |
| hypothetical protein | DD563_02465 | Not Available | Positive | 508851 - 510080 | 42499.8 |
| gmp synthase (glutamine-hydrolyzing) | DD563_02470 | Not Available | Negative | 510091 - 511653 | 57297.6 |
| hypothetical protein | DD563_02475 | Not Available | Negative | 511663 - 512880 | 42480.2 |
| trimethylamine methyltransferase | DD563_02480 | Not Available | Positive | 513084 - 514628 | 55978.0 |
| hypothetical protein | DD563_02485 | Not Available | Negative | 514638 - 514928 | 10647.1 |
| helix-turn-helix domain containing protein | DD563_02490 | Not Available | Positive | 515186 - 516313 | 41076.0 |
| catalase/peroxidase hpi | DD563_02495 | Not Available | Negative | 516448 - 518637 | 79179.8 |
| lysr family transcriptional regulator | DD563_02500 | Not Available | Positive | 518787 - 519761 | 34943.3 |
| lipoyl synthase | DD563_02505 | Not Available | Positive | 519946 - 520893 | 34987.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
