Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna-binding response regulator | DD563_00115 | Not Available | Positive | 21329 - 21988 | 23908.8 |
| two-component sensor histidine kinase | DD563_00120 | Not Available | Positive | 21985 - 23325 | 48187.9 |
| pyocin activator protein prtn | DD563_00125 | Not Available | Negative | 23928 - 24194 | 9971.96 |
| duf2274 domain-containing protein | DD563_00130 | Not Available | Negative | 24383 - 24607 | 8364.44 |
| conjugal transfer protein trai | DD563_00135 | Not Available | Negative | 24607 - 25782 | 41447.1 |
| p-type conjugative transfer protein trbg | DD563_00140 | Not Available | Negative | 25779 - 26735 | 34864.6 |
| conjugal transfer protein trbf | DD563_00145 | Not Available | Negative | 26732 - 27415 | 25609.3 |
| p-type conjugative transfer protein trbl | DD563_00150 | Not Available | Negative | 27415 - 28728 | 43424.7 |
| conjugal transfer protein trbk | DD563_00155 | Not Available | Negative | 28733 - 29002 | 9810.7 |
| p-type conjugative transfer protein trbj | DD563_00160 | Not Available | Negative | 29011 - 29778 | 27504.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
