Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tetr family transcriptional regulator | DD563_02360 | Not Available | Negative | 486873 - 487490 | 21906.1 |
| polyphosphate kinase 2 | DD563_02365 | Not Available | Negative | 487483 - 488352 | 33423.9 |
| alpha/beta hydrolase | DD563_02370 | Not Available | Negative | 488405 - 489382 | 34051.9 |
| homoserine o-succinyltransferase | DD563_02375 | Not Available | Negative | 489421 - 490353 | 35118.7 |
| atpase | DD563_02380 | Not Available | Negative | 490383 - 491252 | 32240.2 |
| hypothetical protein | DD563_02385 | Not Available | Negative | 491412 - 492476 | 37708.8 |
| marr family transcriptional regulator | DD563_02390 | Not Available | Positive | 493067 - 493684 | 21527.6 |
| sodium:proton antiporter | DD563_02395 | Not Available | Positive | 493732 - 494877 | 39480.8 |
| hypothetical protein | DD563_02400 | Not Available | Positive | 494870 - 496141 | 44253.4 |
| 4fe-4s ferredoxin | DD563_02405 | Not Available | Negative | 496157 - 498169 | 69789.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
