Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DD563_02310 | Not Available | Positive | 478991 - 479224 | 7980.52 |
| fadh(2)-oxidizing methylenetetrahydrofolate--trna-(uracil(54)-c(5))- methyltransferase trmfo | DD563_02315 | Not Available | Negative | 479326 - 480660 | 48172.7 |
| enoyl-coa hydratase | DD563_02320 | Not Available | Negative | 480860 - 481645 | 27870.8 |
| thioesterase | DD563_02325 | Not Available | Positive | 481703 - 482128 | 14907.4 |
| flagellar biosynthesis protein flga | DD563_02330 | Not Available | Negative | 482133 - 483467 | 47421.6 |
| hypothetical protein | DD563_02335 | Not Available | Negative | 483661 - 483882 | 8077.89 |
| plp-dependent aminotransferase family protein | DD563_02340 | Not Available | Positive | 484056 - 485378 | 47479.5 |
| 50s ribosomal protein l13 | DD563_02345 | Not Available | Positive | 485539 - 486003 | 17237.0 |
| 30s ribosomal protein s9 | DD563_02350 | Not Available | Positive | 486003 - 486488 | 17308.0 |
| hypothetical protein | DD563_02355 | Not Available | Negative | 486541 - 486876 | 12204.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
