Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf1009 domain-containing protein | DD563_02260 | Not Available | Positive | 467894 - 468700 | 27378.6 |
| lipid-a-disaccharide synthase | DD563_02265 | Not Available | Positive | 468697 - 469845 | 41170.6 |
| trna 2-thiouridine(34) synthase mnma | DD563_02270 | Not Available | Negative | 469842 - 470978 | 41228.1 |
| duf1153 domain-containing protein | DD563_02275 | Not Available | Positive | 471136 - 471414 | 10408.5 |
| dna-binding response regulator | DD563_02280 | Not Available | Positive | 471510 - 472226 | 26600.2 |
| dna ligase (nad(+)) liga | DD563_02285 | Not Available | Positive | 472388 - 474502 | 75638.2 |
| atp-dependent dna helicase recg | DD563_02290 | Not Available | Positive | 474499 - 476589 | 75210.2 |
| iron-sulfur cluster assembly scaffold protein | DD563_02295 | Not Available | Negative | 477059 - 477505 | 15483.5 |
| phosphoribosyl-amp cyclohydrolase | DD563_02300 | Not Available | Positive | 477572 - 477934 | 13480.9 |
| trna glutamyl-q(34) synthetase gluqrs | DD563_02305 | Not Available | Negative | 478077 - 478922 | 30775.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
