Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ump kinase | DD563_02210 | Not Available | Positive | 457764 - 458489 | 26306.1 |
| ribosome recycling factor | DD563_02215 | Not Available | Positive | 458571 - 459134 | 21046.2 |
| di-trans,poly-cis-decaprenylcistransferase | DD563_02220 | Not Available | Positive | 459134 - 459862 | 27167.3 |
| phosphatidate cytidylyltransferase | DD563_02225 | Not Available | Positive | 459859 - 460647 | 26946.8 |
| 1-deoxy-d-xylulose-5-phosphate reductoisomerase | DD563_02230 | Not Available | Positive | 460644 - 461810 | 41196.3 |
| rip metalloprotease rsep | DD563_02235 | Not Available | Positive | 461844 - 463190 | 47067.3 |
| outer membrane protein assembly factor bama | DD563_02240 | Not Available | Positive | 463573 - 465903 | 85516.3 |
| hypothetical protein | DD563_02245 | Not Available | Positive | 465908 - 466543 | 23107.5 |
| 3-hydroxyacyl-[acyl-carrier-protein] dehydratase fabz | DD563_02250 | Not Available | Positive | 466636 - 467106 | 17150.3 |
| acyl-[acyl-carrier-protein]--udp-n- acetylglucosamine o-acyltransferase | DD563_02255 | Not Available | Positive | 467103 - 467894 | 27450.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
