Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gamma-glutamyl kinase | DD563_02160 | Not Available | Negative | 446258 - 446896 | 24124.8 |
| recombinase reca | DD563_02165 | Not Available | Positive | 447089 - 448192 | 39325.3 |
| alanine--trna ligase | DD563_02170 | Not Available | Positive | 448314 - 450974 | 94886.9 |
| duf1330 domain-containing protein | DD563_02175 | Not Available | Positive | 450978 - 451265 | 10433.3 |
| translational gtpase typa | DD563_02180 | Not Available | Negative | 451676 - 453496 | 66231.2 |
| hypothetical protein | DD563_02185 | Not Available | Negative | 453589 - 454449 | 31128.6 |
| single-stranded dna-binding protein | DD563_02190 | Not Available | Negative | 454492 - 455010 | 17916.7 |
| lytic transglycosylase | DD563_02195 | Not Available | Positive | 455239 - 455811 | 21008.0 |
| arac family transcriptional regulator | DD563_02200 | Not Available | Negative | 455882 - 456667 | 28546.4 |
| trna (adenosine(37)-n6)-dimethylallyltransferase miaa | DD563_02205 | Not Available | Negative | 456768 - 457652 | 31578.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
