Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| adp-forming succinate--coa ligase subunit beta | DD563_02110 | Not Available | Negative | 432253 - 433443 | 42670.0 |
| coa ester lyase | DD563_02115 | Not Available | Negative | 433448 - 434395 | 34030.7 |
| d-glycerate dehydrogenase | DD563_02120 | Not Available | Negative | 434745 - 435719 | 34595.2 |
| serine--glyoxylate aminotransferase | DD563_02125 | Not Available | Negative | 435731 - 436909 | 42317.8 |
| dna-binding response regulator | DD563_02130 | Not Available | Positive | 437152 - 437778 | 22581.7 |
| drug:proton antiporter | DD563_02135 | Not Available | Negative | 437833 - 439875 | 72163.7 |
| agmatinase | DD563_02140 | Not Available | Negative | 440100 - 441056 | 33935.0 |
| imp dehydrogenase | DD563_02145 | Not Available | Positive | 441196 - 442644 | 50201.4 |
| sam-dependent methyltransferase | DD563_02150 | Not Available | Positive | 442694 - 443848 | 40795.7 |
| hybrid sensor histidine kinase/response regulator | DD563_02155 | Not Available | Positive | 444047 - 446254 | 79835.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
